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Alternative Hydrophobic Core in Proteins—The Effect of Specific Synergy
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Effects of natural mutations (L94I and L94V) on the stability and mechanism of folding of horse cytochrome c: A combined in vitro and molecular dynamics simulations approach
Energy Landscapes for Proteins: From Single Funnels to Multifunctional Systems
Konstantin Röder, Jerelle A. Joseph, Brooke E. Husic and David J. Wales Advanced Theory and Simulations 2(4) (2019) https://doi.org/10.1002/adts.201800175
Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes
Dorota Latek, Bartosz Trzaskowski, Szymon Niewieczerzał, et al. Springer Series on Bio- and Neurosystems, Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes 8 371 (2019) https://doi.org/10.1007/978-3-319-95843-9_12
Performance of ACE-Reaction on 26 Organic Reactions for Fully Automated Reaction Network Construction and Microkinetic Analysis
Jin Woo Kim, Yeonjoon Kim, Kyung Yup Baek, Kyunghoon Lee and Woo Youn Kim The Journal of Physical Chemistry A 123(22) 4796 (2019) https://doi.org/10.1021/acs.jpca.9b02161
Automatically obtaining a cellular automaton scheme for modeling protein folding using the FCC model
Unfolded states under folding conditions accommodate sequence-specific conformational preferences with random coil-like dimensions
Ivan Peran, Alex S. Holehouse, Isaac S. Carrico, et al. Proceedings of the National Academy of Sciences 116(25) 12301 (2019) https://doi.org/10.1073/pnas.1818206116
The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins
GRSA Enhanced for Protein Folding Problem in the Case of Peptides
Juan Frausto-Solís, Juan Paulo Sánchez-Hernández, Fanny G. Maldonado-Nava and Juan J. González-Barbosa Axioms 8(4) 136 (2019) https://doi.org/10.3390/axioms8040136
Electronic and Steric Control of n→π* Interactions: Stabilization of the α‐Helix Conformation without a Hydrogen Bond
Nicole A. Wenzell, Himal K. Ganguly, Anil K. Pandey, Megh R. Bhatt, Glenn P. A. Yap and Neal J. Zondlo ChemBioChem 20(7) 963 (2019) https://doi.org/10.1002/cbic.201800785
Insight into the functional and structural transition of garlic phytocystatin induced by urea and guanidine hydrochloride: A comparative biophysical study
Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications
Fanny G. Maldonado-Nava, Juan Frausto-Solís, Juan Paulo Sánchez-Hernández, Juan Javier González Barbosa and Ernesto Liñán-García Studies in Computational Intelligence, Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications 749 449 (2018) https://doi.org/10.1007/978-3-319-71008-2_32
Incorporation of Solvent Effect into Multi-Objective Evolutionary Algorithm for Improved Protein Structure Prediction
Shangce Gao, Shuangbao Song, Jiujun Cheng, Yuki Todo and MengChu Zhou IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(4) 1365 (2018) https://doi.org/10.1109/TCBB.2017.2705094
RNA folding kinetics using Monte Carlo and Gillespie algorithms
Trends in Biomathematics: Modeling, Optimization and Computational Problems
Alexei V. Finkelstein, Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, et al. Trends in Biomathematics: Modeling, Optimization and Computational Problems 391 (2018) https://doi.org/10.1007/978-3-319-91092-5_27
On a generalized Levinthal's paradox: The role of long- and short range interactions in complex bio-molecular reactions, including protein and DNA folding
A mechanistic insight into protein-ligand interaction, folding, misfolding, aggregation and inhibition of protein aggregates: An overview
Tajalli Ilm Chandel, Masihuz Zaman, Mohsin Vahid Khan, Maroof Ali, Gulam Rabbani, Mohd Ishtikhar and Rizwan Hasan Khan International Journal of Biological Macromolecules 106 1115 (2018) https://doi.org/10.1016/j.ijbiomac.2017.07.185
Philippe Youkharibache, Alexander Tran and Ravinder Abrol (2018) https://doi.org/10.1101/465302
Pyrene Excimer Fluorescence as a Direct and Easy Experimental Means To Characterize the Length Scale and Internal Dynamics of Polypeptide Foldons
Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications
Anylu Melo-Vega, Juan Frausto-Solís, Guadalupe Castilla-Valdez, et al. Studies in Computational Intelligence, Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications 749 141 (2018) https://doi.org/10.1007/978-3-319-71008-2_12
Bruno Borguesan, Pedro Henrique Narloch, Mario Inostroza-Ponta and Marcio Dorn 1 (2018) https://doi.org/10.1109/CEC.2018.8477721
The Role of Hydrogen Bonding in the Folding/Unfolding Process of Hydrated Lysozyme: A Review of Recent NMR and FTIR Results
Domenico Mallamace, Enza Fazio, Francesco Mallamace and Carmelo Corsaro International Journal of Molecular Sciences 19(12) 3825 (2018) https://doi.org/10.3390/ijms19123825
1,1,1,3,3,3-Hexafluoroisopropanol and 2,2,2-trifluoroethanol act more effectively on protein in combination than individually: Thermodynamic aspects
A Memetic Algorithm for 3D Protein Structure Prediction Problem
Leonardo Correa, Bruno Borguesan, Camilo Farfan, Mario Inostroza-Ponta and Marcio Dorn IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(3) 690 (2018) https://doi.org/10.1109/TCBB.2016.2635143
Store operated calcium entry: From concept to structural mechanisms
Selective pressure for rapid membrane integration constrains the sequence of bacterial outer membrane proteins
Janine H. Peterson, Ashlee M. Plummer, Karen G. Fleming and Harris D. Bernstein Molecular Microbiology 106(5) 777 (2017) https://doi.org/10.1111/mmi.13845
After Fifty Years, Why Are Protein X-ray Crystallographers Still in Business?
Sandra D. Mitchell and Angela M. Gronenborn The British Journal for the Philosophy of Science 68(3) 703 (2017) https://doi.org/10.1093/bjps/axv051
Krishna Mohan Poluri and Khushboo Gulati SpringerBriefs in Applied Sciences and Technology, Protein Engineering Techniques 1 (2017) https://doi.org/10.1007/978-981-10-2732-1_1
Schottky-like anomalies and phase transitions in ideal heteropolymer proteinogenic chains in terms of size and single-residue helical propensity
Multi-Agent-Based Simulations Applied to Biological and Environmental Systems
Leonardo de Lima Corrêa and Márcio Dorn Advances in Computational Intelligence and Robotics, Multi-Agent-Based Simulations Applied to Biological and Environmental Systems 241 (2017) https://doi.org/10.4018/978-1-5225-1756-6.ch011
An Enhanced Genetic Algorithm for Ab Initio Protein Structure Prediction
Mahmood A. Rashid, Firas Khatib, Md Tamjidul Hoque and Abdul Sattar IEEE Transactions on Evolutionary Computation 20(4) 627 (2016) https://doi.org/10.1109/TEVC.2015.2505317