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Unfolded states under folding conditions accommodate sequence-specific conformational preferences with random coil-like dimensions
Ivan Peran, Alex S. Holehouse, Isaac S. Carrico, et al. Proceedings of the National Academy of Sciences 116(25) 12301 (2019) https://doi.org/10.1073/pnas.1818206116
Electronic and Steric Control of n→π* Interactions: Stabilization of the α‐Helix Conformation without a Hydrogen Bond
Nicole A. Wenzell, Himal K. Ganguly, Anil K. Pandey, Megh R. Bhatt, Glenn P. A. Yap and Neal J. Zondlo ChemBioChem 20(7) 963 (2019) https://doi.org/10.1002/cbic.201800785
Performance of ACE-Reaction on 26 Organic Reactions for Fully Automated Reaction Network Construction and Microkinetic Analysis
Jin Woo Kim, Yeonjoon Kim, Kyung Yup Baek, Kyunghoon Lee and Woo Youn Kim The Journal of Physical Chemistry A 123(22) 4796 (2019) https://doi.org/10.1021/acs.jpca.9b02161
Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications
Fanny G. Maldonado-Nava, Juan Frausto-Solís, Juan Paulo Sánchez-Hernández, Juan Javier González Barbosa and Ernesto Liñán-García Studies in Computational Intelligence, Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications 749 449 (2018) https://doi.org/10.1007/978-3-319-71008-2_32
A mechanistic insight into protein-ligand interaction, folding, misfolding, aggregation and inhibition of protein aggregates: An overview
The Role of Hydrogen Bonding in the Folding/Unfolding Process of Hydrated Lysozyme: A Review of Recent NMR and FTIR Results
Domenico Mallamace, Enza Fazio, Francesco Mallamace and Carmelo Corsaro International Journal of Molecular Sciences 19(12) 3825 (2018) https://doi.org/10.3390/ijms19123825
Trends in Biomathematics: Modeling, Optimization and Computational Problems
Alexei V. Finkelstein, Oxana V. Galzitskaya, Sergiy O. Garbuzynskiy, et al. Trends in Biomathematics: Modeling, Optimization and Computational Problems 391 (2018) https://doi.org/10.1007/978-3-319-91092-5_27
Philippe Youkharibache, Alexander Tran and Ravinder Abrol (2018) https://doi.org/10.1101/465302
Finding the needle in the haystack: towards solving the protein-folding problem computationally
Insight into the functional and structural transition of garlic phytocystatin induced by urea and guanidine hydrochloride: A comparative biophysical study
On a generalized Levinthal's paradox: The role of long- and short range interactions in complex bio-molecular reactions, including protein and DNA folding
Exploring the effects of sparse restraints on protein structure prediction
Varun Mandalaparthy, Venkata Ramana Sanaboyana, Hitesh Rafalia and Shachi Gosavi Proteins: Structure, Function, and Bioinformatics 86(2) 248 (2018) https://doi.org/10.1002/prot.25438
A Memetic Algorithm for 3D Protein Structure Prediction Problem
Leonardo Correa, Bruno Borguesan, Camilo Farfan, Mario Inostroza-Ponta and Marcio Dorn IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(3) 690 (2018) https://doi.org/10.1109/TCBB.2016.2635143
Effect of pH and surfactant on the protein: A perspective from theory and experiments
Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications
Anylu Melo-Vega, Juan Frausto-Solís, Guadalupe Castilla-Valdez, et al. Studies in Computational Intelligence, Fuzzy Logic Augmentation of Neural and Optimization Algorithms: Theoretical Aspects and Real Applications 749 141 (2018) https://doi.org/10.1007/978-3-319-71008-2_12
Incorporation of Solvent Effect into Multi-Objective Evolutionary Algorithm for Improved Protein Structure Prediction
Shangce Gao, Shuangbao Song, Jiujun Cheng, Yuki Todo and MengChu Zhou IEEE/ACM Transactions on Computational Biology and Bioinformatics 15(4) 1365 (2018) https://doi.org/10.1109/TCBB.2017.2705094
Arborescent Poly(l-glutamic acid)s as Standards To Study the Dense Interior of Polypeptide Mesoglobules by Pyrene Excimer Fluorescence
Selective pressure for rapid membrane integration constrains the sequence of bacterial outer membrane proteins
Janine H. Peterson, Ashlee M. Plummer, Karen G. Fleming and Harris D. Bernstein Molecular Microbiology 106(5) 777 (2017) https://doi.org/10.1111/mmi.13845
Classification of Protein Structure Classes on Flexible Neutral Tree
Wenzheng Bao, Dong Wang and Yuehui Chen IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(5) 1122 (2017) https://doi.org/10.1109/TCBB.2016.2610967
The push-and-pull hypothesis in protein unfolding, misfolding and aggregation
A Computational Approach to Studying Protein Folding Problems Considering the Crucial Role of the Intracellular Environment
Pedro P. González-Pérez, Daniel J. Orta, Irving Peña, et al. Journal of Computational Biology 24(10) 995 (2017) https://doi.org/10.1089/cmb.2016.0115
Multi-Agent-Based Simulations Applied to Biological and Environmental Systems
Leonardo de Lima Corrêa and Márcio Dorn Advances in Computational Intelligence and Robotics, Multi-Agent-Based Simulations Applied to Biological and Environmental Systems 241 (2017) https://doi.org/10.4018/978-1-5225-1756-6.ch011
After Fifty Years, Why Are Protein X-ray Crystallographers Still in Business?
Sandra D. Mitchell and Angela M. Gronenborn The British Journal for the Philosophy of Science 68(3) 703 (2017) https://doi.org/10.1093/bjps/axv051
Multifunctional Cytochrome c: Learning New Tricks from an Old Dog
Krishna Mohan Poluri and Khushboo Gulati SpringerBriefs in Applied Sciences and Technology, Protein Engineering Techniques 1 (2017) https://doi.org/10.1007/978-981-10-2732-1_1
Ion Channels and Transporters of Epithelia in Health and Disease
Proceedings of Fifth International Conference on Soft Computing for Problem Solving
Sandhya P N Dubey, S. Balaji, N. Gopalakrishna Kini and M. Sathish Kumar Advances in Intelligent Systems and Computing, Proceedings of Fifth International Conference on Soft Computing for Problem Solving 437 387 (2016) https://doi.org/10.1007/978-981-10-0451-3_36
An Enhanced Genetic Algorithm for Ab Initio Protein Structure Prediction
Mahmood A. Rashid, Firas Khatib, Md Tamjidul Hoque and Abdul Sattar IEEE Transactions on Evolutionary Computation 20(4) 627 (2016) https://doi.org/10.1109/TEVC.2015.2505317
Cytochrome
c
folds through foldon-dependent native-like intermediates in an ordered pathway
Wenbing Hu, Zhong-Yuan Kan, Leland Mayne and S. Walter Englander Proceedings of the National Academy of Sciences 113(14) 3809 (2016) https://doi.org/10.1073/pnas.1522674113
Infrared and Fluorescence Assessment of Protein Dynamics: From Folding to Function
Contingency, convergence and hyper-astronomical numbers in biological evolution
Ard A. Louis Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 58 107 (2016) https://doi.org/10.1016/j.shpsc.2015.12.014
An IMS–IMS threshold method for semi-quantitative determination of activation barriers: Interconversion of proline cis↔trans forms in triply protonated bradykinin