Articles citing this article

The Citing articles tool gives a list of articles citing the current article.
The citing articles come from EDP Sciences database, as well as other publishers participating in CrossRef Cited-by Linking Program. You can set up your personal account to receive an email alert each time this article is cited by a new article (see the menu on the right-hand side of the abstract page).

Cited article:

Identical RNA-Protein Interactions in Vivo and in Vitro and a Scheme of Folding the Newly Synthesized Proteins by Ribosomes

Debasis Das, Dibyendu Samanta, Salman Hasan, et al.
Journal of Biological Chemistry 287 (44) 37508 (2012)
https://doi.org/10.1074/jbc.M112.396127

Global energy minimisation and cotranslational protein folding of HP models

Graham R. Wood, Yumi Patton and David W. Fisher
Journal of Global Optimization 52 (3) 575 (2012)
https://doi.org/10.1007/s10898-011-9791-1

Secondary and Tertiary Structure of Bacteriorhodopsin in the SDS Denatured State

Venkatramanan Krishnamani, Balachandra G. Hegde, Ralf Langen and Janos K. Lanyi
Biochemistry 51 (6) 1051 (2012)
https://doi.org/10.1021/bi201769z

Electrostatic Ratchet in the Protective Antigen Channel Promotes Anthrax Toxin Translocation

Sarah L. Wynia-Smith, Michael J. Brown, Gina Chirichella, Gigi Kemalyan and Bryan A. Krantz
Journal of Biological Chemistry 287 (52) 43753 (2012)
https://doi.org/10.1074/jbc.M112.419598

Precise hierarchical self-assembly of multicompartment micelles

André H. Gröschel, Felix H. Schacher, Holger Schmalz, et al.
Nature Communications 3 (1) (2012)
https://doi.org/10.1038/ncomms1707

RNA 3D Structure Analysis and Prediction

Parin Sripakdeevong, Kyle Beauchamp and Rhiju Das
Nucleic Acids and Molecular Biology, RNA 3D Structure Analysis and Prediction 27 43 (2012)
https://doi.org/10.1007/978-3-642-25740-7_4

Nucleation‐based prediction of the protein folding rate and its correlation with the folding nucleus size

Oxana V. Galzitskaya and Anna V. Glyakina
Proteins: Structure, Function, and Bioinformatics 80 (12) 2711 (2012)
https://doi.org/10.1002/prot.24156

Computational Modeling of Biological Systems

Ashley I. Teufel, Johan A. Grahnen and David A. Liberles
Biological and Medical Physics, Biomedical Engineering, Computational Modeling of Biological Systems 347 (2012)
https://doi.org/10.1007/978-1-4614-2146-7_15

A comprehensive library of blocked dipeptides reveals intrinsic backbone conformational propensities of unfolded proteins

Kwang‐Im Oh, Kyung‐Koo Lee, Eun‐Kyung Park, Youngae Jung, Geum‐Sook Hwang and Minhaeng Cho
Proteins: Structure, Function, and Bioinformatics 80 (4) 977 (2012)
https://doi.org/10.1002/prot.24000

Characterization of deamidation of barstar using electrospray ionization quadrupole time‐of‐flight mass spectrometry, which stabilizes an equilibrium unfolding intermediate

Santosh Kumar Jha, Putchen Dakshinamoorthy Deepalakshmi and Jayant B. Udgaonkar
Protein Science 21 (5) 633 (2012)
https://doi.org/10.1002/pro.2047

Hydrophobic Forces, Electrostatic Steering, and Acid–Base Bridging between Atomically Smooth Self-Assembled Monolayers and End-Functionalized PEGolated Lipid Bilayers

Markus Valtiner, Stephen H. Donaldson, Matthew A. Gebbie and Jacob N. Israelachvili
Journal of the American Chemical Society 134 (3) 1746 (2012)
https://doi.org/10.1021/ja209653n

An enumerative stepwise ansatz enables atomic-accuracy RNA loop modeling

Parin Sripakdeevong, Wipapat Kladwang and Rhiju Das
Proceedings of the National Academy of Sciences 108 (51) 20573 (2011)
https://doi.org/10.1073/pnas.1106516108

Robustness of multidimensional Brownian ratchets as directed transport mechanisms

Ernesto González-Candela, Víctor Romero-Rochín and Fernando Del Río
The Journal of Chemical Physics 135 (5) (2011)
https://doi.org/10.1063/1.3624334

Backbones of Folded Proteins Reveal Novel Invariant Amino Acid Neighborhoods

Aditya Mittal and B. Jayaram
Journal of Biomolecular Structure and Dynamics 28 (4) 443 (2011)
https://doi.org/10.1080/073911011010524954

The Yeast Prion Case: Could There be a Uniform Concept Underlying Complex Protein Folding?

Youtao Song, Yao Song and Xing Chen
Journal of Biomolecular Structure and Dynamics 28 (4) 663 (2011)
https://doi.org/10.1080/073911011010524982

Multiscale modeling of biological functions

Shina Caroline Lynn Kamerlin and Arieh Warshel
Physical Chemistry Chemical Physics 13 (22) 10401 (2011)
https://doi.org/10.1039/c0cp02823a

Hierarchy of folding and unfolding events of protein G, CI2, and ACBP from explicit-solvent simulations

Carlo Camilloni, Ricardo A. Broglia and Guido Tiana
The Journal of Chemical Physics 134 (4) (2011)
https://doi.org/10.1063/1.3523345

Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions: Principles of Protein Folding from Coarse-Grained Models

Hue Sun Chan, Zhuqing Zhang, Stefan Wallin and Zhirong Liu
Annual Review of Physical Chemistry 62 (1) 301 (2011)
https://doi.org/10.1146/annurev-physchem-032210-103405

LoCo: a novel main chain scoring function for protein structure prediction based on local coordinates

Stewart E Moughon and Ram Samudrala
BMC Bioinformatics 12 (1) (2011)
https://doi.org/10.1186/1471-2105-12-368

Microsecond Scale Replica Exchange Molecular Dynamic Simulation of Villin Headpiece: An Insight into the Folding Landscape

Vinod Jani, Uddhavesh B. Sonavane and Rajendra Joshi
Journal of Biomolecular Structure and Dynamics 28 (6) 845 (2011)
https://doi.org/10.1080/07391102.2011.10508612

Conformation and thermodynamic stability of pre-molten and molten globule states of mammalian cytochromes-c

Md. Khurshid Alam Khan, Hamidur Rahaman and Faizan Ahmad
Metallomics 3 (4) 327 (2011)
https://doi.org/10.1039/c0mt00078g

Nonadditivity in Conformational Entropy upon Molecular Rigidification Reveals a Universal Mechanism Affecting Folding Cooperativity

Oleg K. Vorov, Dennis R. Livesay and Donald J. Jacobs
Biophysical Journal 100 (4) 1129 (2011)
https://doi.org/10.1016/j.bpj.2011.01.027

Some aspects of the protein folding problem examined in one-dimensional systems

Arieh Ben-Naim
The Journal of Chemical Physics 135 (8) (2011)
https://doi.org/10.1063/1.3626859

Influence of long-range contacts and surrounding residues on the transition state structures of proteins

M. Michael Gromiha
Analytical Biochemistry 408 (1) 32 (2011)
https://doi.org/10.1016/j.ab.2010.08.029

Effect of local thermal fluctuations on folding kinetics: A study from the perspective of nonextensive statistical mechanics

J. P. Dal Molin, M. A. A. da Silva and A. Caliri
Physical Review E 84 (4) (2011)
https://doi.org/10.1103/PhysRevE.84.041903

A Correction Algorithm for the Torque/Rotation Coefficient Used in the Prediction of Protein Conformations Using Robotic Methods

M. H. Korayem and A. Daryani
Arabian Journal for Science and Engineering 36 (5) 867 (2011)
https://doi.org/10.1007/s13369-011-0084-2

Roles for the two N‐terminal (β/α) modules in the folding of a (β/α)8‐barrel protein as studied by fragmentation analysis

Satoshi Akanuma and Akihiko Yamagishi
Proteins: Structure, Function, and Bioinformatics 79 (1) 221 (2011)
https://doi.org/10.1002/prot.22874

The protein kingdom extended: Ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation

Konstantin K. Turoverov, Irina M. Kuznetsova and Vladimir N. Uversky
Progress in Biophysics and Molecular Biology 102 (2-3) 73 (2010)
https://doi.org/10.1016/j.pbiomolbio.2010.01.003

Controlled Formation of Nanostructures with Desired Geometries. 2. Robust Dynamic Paths

Earl O. P. Solis, Paul I. Barton and George Stephanopoulos
Industrial & Engineering Chemistry Research 49 (17) 7746 (2010)
https://doi.org/10.1021/ie1000778

Lectin chaperones help direct the maturation of glycoproteins in the endoplasmic reticulum

Bradley R. Pearse and Daniel N. Hebert
Biochimica et Biophysica Acta (BBA) - Molecular Cell Research 1803 (6) 684 (2010)
https://doi.org/10.1016/j.bbamcr.2009.10.008

Molecular Modeling and Simulation: An Interdisciplinary Guide

Tamar Schlick
Interdisciplinary Applied Mathematics, Molecular Modeling and Simulation: An Interdisciplinary Guide 21 163 (2010)
https://doi.org/10.1007/978-1-4419-6351-2_6

Performance of phased rotation, conformation and translation function: accurate protein model building with tripeptidic and tetrapeptidic fragments

František Pavelčík and Jiří Václavík
Acta Crystallographica Section D Biological Crystallography 66 (9) 1012 (2010)
https://doi.org/10.1107/S0907444910030234

A Stoichiometry Driven Universal Spatial Organization of Backbones of Folded Proteins: Are there Chargaff's Rules for Protein Folding?

Aditya Mittal, B. Jayaram, Sandhya Shenoy and Tejdeep Singh Bawa
Journal of Biomolecular Structure and Dynamics 28 (2) 133 (2010)
https://doi.org/10.1080/07391102.2010.10507349

Modulating Native-like Residual Structure in the Fully Denatured State of Photoactive Yellow Protein Affects Its Refolding

Byoung-Chul Lee, Masato Kumauchi and Wouter D. Hoff
Journal of Biological Chemistry 285 (17) 12579 (2010)
https://doi.org/10.1074/jbc.M109.065821

Multiple native states reveal persistent ruggedness of an RNA folding landscape

Sergey V. Solomatin, Max Greenfeld, Steven Chu and Daniel Herschlag
Nature 463 (7281) 681 (2010)
https://doi.org/10.1038/nature08717

Molecular Modeling and Simulation: An Interdisciplinary Guide

Tamar Schlick
Interdisciplinary Applied Mathematics, Molecular Modeling and Simulation: An Interdisciplinary Guide 21 129 (2010)
https://doi.org/10.1007/978-1-4419-6351-2_5

Protein folding simulations of 2D HP model by the genetic algorithm based on optimal secondary structures

Chenhua Huang, Xiangbo Yang and Zhihong He
Computational Biology and Chemistry 34 (3) 137 (2010)
https://doi.org/10.1016/j.compbiolchem.2010.04.002

Insights into the folding pathway of the Engrailed Homeodomain protein using replica exchange molecular dynamics simulations

Shruti Koulgi, Uddhavesh Sonavane and Rajendra Joshi
Journal of Molecular Graphics and Modelling 29 (3) 481 (2010)
https://doi.org/10.1016/j.jmgm.2010.09.007

Strategies to increase the reproducibility of protein fibrillization in plate reader assays

Lise Giehm and Daniel E. Otzen
Analytical Biochemistry 400 (2) 270 (2010)
https://doi.org/10.1016/j.ab.2010.02.001

Le monde complexe et mouvant des ARN. Première partie

J. Lamoril, N. Ameziane, J.-C. Deybach, P. Bouizegarène and M. Bogard
Immuno-analyse & Biologie Spécialisée 25 (1) 4 (2010)
https://doi.org/10.1016/j.immbio.2010.01.002

HORI: a web server to compute Higher Order Residue Interactions in protein structures

Pandurangan Sundaramurthy, Khader Shameer, Raashi Sreenivasan, Sunita Gakkhar and Ramanathan Sowdhamini
BMC Bioinformatics 11 (S1) (2010)
https://doi.org/10.1186/1471-2105-11-S1-S24

Practically Useful: What the Rosetta Protein Modeling Suite Can Do for You

Kristian W. Kaufmann, Gordon H. Lemmon, Samuel L. DeLuca, Jonathan H. Sheehan and Jens Meiler
Biochemistry 49 (14) 2987 (2010)
https://doi.org/10.1021/bi902153g

Folding kinetics of two-state proteins based on the model of general random walk in native contact number space

J.S. Guo, D. Mi and Y.Q. Sun
Physica A: Statistical Mechanics and its Applications 389 (4) 761 (2010)
https://doi.org/10.1016/j.physa.2009.10.026

Prediction of Folding Equilibria of Differently Substituted Peptides Using One-Step Perturbation

Zhixiong Lin, Jörgen Kornfeld, Markus Mächler and Wilfred F. van Gunsteren
Journal of the American Chemical Society 132 (21) 7276 (2010)
https://doi.org/10.1021/ja100879k

Topological Switching between an α−β Parallel Protein and a Remarkably Helical Molten Globule

Sanne M. Nabuurs, Adrie H. Westphal, Marije aan den Toorn, Simon Lindhoud and Carlo P. M. van Mierlo
Journal of the American Chemical Society 131 (23) 8290 (2009)
https://doi.org/10.1021/ja9014309