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Cited article:
AD MacKerell
J. Chim. Phys., 94 (1997) 1436-1447
Published online: 2017-05-29
This article has been cited by the following article(s):
16 articles
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Alexander D. MacKerell, Jr. The Journal of Physical Chemistry B 113 (10) 3235 (2009) https://doi.org/10.1021/jp8102782
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Molecular modelling of the complex of oligomeric rhodopsin and its G protein
K A Krzysko, M Kolinski and S Filipek Journal of Physics: Condensed Matter 19 (28) 285204 (2007) https://doi.org/10.1088/0953-8984/19/28/285204
Computational study of dimethyl phosphate anion and its complexes with water, magnesium, and calcium
Anton S. Petrov, Joni Funseth‐Smotzer and George R. Pack International Journal of Quantum Chemistry 102 (5) 645 (2005) https://doi.org/10.1002/qua.20442
Free Energy and Structural Pathways of Base Flipping in a DNA GCGC Containing Sequence
Nilesh K Banavali and Alexander D MacKerell Journal of Molecular Biology 319 (1) 141 (2002) https://doi.org/10.1016/S0022-2836(02)00194-8
Conformational dynamics of the dimethyl phosphate anion in solution
Eric Schwegler, Giulia Galli and François Gygi Chemical Physics Letters 342 (3-4) 434 (2001) https://doi.org/10.1016/S0009-2614(01)00604-2
Ab initio conformational analysis of nucleic acid components: Intrinsic energetic contributions to nucleic acid structure and dynamics
Nicolas Foloppe, Lennart Nilsson and Alexander D. MacKerell Biopolymers 61 (1) 61 (2001) https://doi.org/10.1002/1097-0282(2001)61:1<61::AID-BIP10047>3.0.CO;2-1
Short Wavelength Collective Dynamics in Phospholipid Bilayers: A Molecular Dynamics Study
M. Tarek, D. J. Tobias, S.-H. Chen and M. L. Klein Physical Review Letters 87 (23) (2001) https://doi.org/10.1103/PhysRevLett.87.238101
Electronic Polarization and Hydration of the Dimethyl phosphate Anion: An ab Initio Molecular Dynamics Study
I−Feng Kuo and Douglas J. Tobias The Journal of Physical Chemistry B 105 (24) 5827 (2001) https://doi.org/10.1021/jp003900a
Orbital interactions in stable and metastable conformations of the dimethylphosphate anion
Donald B. DuPré, Igor Vorobyov and M.Cecilia Yappert Journal of Molecular Structure: THEOCHEM 544 (1-3) 91 (2001) https://doi.org/10.1016/S0166-1280(01)00389-X
Development and current status of the CHARMM force field for nucleic acids
Alexander D. MacKerell, Nilesh Banavali and Nicolas Foloppe Biopolymers 56 (4) 257 (2000) https://doi.org/10.1002/1097-0282(2000)56:4<257::AID-BIP10029>3.0.CO;2-W
All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
Nicolas Foloppe and Alexander D. MacKerell, Jr. Journal of Computational Chemistry 21 (2) 86 (2000) https://doi.org/10.1002/(SICI)1096-987X(20000130)21:2<86::AID-JCC2>3.0.CO;2-G
Molecular Dynamics Study of a Lipid−DNA Complex
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Contribution of the Phosphodiester Backbone and Glycosyl Linkage Intrinsic Torsional Energetics to DNA Structure and Dynamics
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Conformational Flexibility of Phosphate, Phosphonate, and Phosphorothioate Methyl Esters in Aqueous Solution
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